HsaEX6074956 @ hg38
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr15:56666395-56668957:-
Coord C1 exon
chr15:56668823-56668957
Coord A exon
chr15:56666679-56666986
Coord C2 exon
chr15:56666395-56666535
Length
308 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTTTATTTTTGTAGGTT
3' ss Score
10.22
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
AAAAAAGGAATACATCGTTGTACAAAATGCAGGCTGCAGTTTTTGACATGCAAGGAGAAAATGGATCATAAGACTCAACACCATCGAACATTTATAAAACCTAAACAACTAGAAGGATTGCCTCCTGGAACAAAA
Seq A exon
GTTACTATTCGAGCTTCAGTTGGACCTCTGCAATCAGGAGCTTCACCTACACCTTCCATTAGTGCAAGTGCTTCTACCCTTCAGCTCTCACCTCCAAGGACTAAAAATATAACTGCTAAAAATCCTGCAAAATCTAATACAAGTAAACCTAATACAGTCAAATCCAACGCAAGTAAACCTAATACAAGTAAGCCTAATGGAAGTAAATCTAAATACAAACCAAAAATCTCTAATATGCAAAAGAAACAAAGCACATTGGCTAGTAGCAATAAAAAAAGTAAAGTCAATACAGCATTGAGGAATTTAAG
Seq C2 exon
GTATCGTCGGGGCATTCACAAATGCATTGAGTGTTGTTCCGAAATAAAAGATTTTGCAAACCACTTTCCTACGTACGTCCACTGTAGTTTTTGCAGATACAACACTAGCTGTAGCAAAGCCTATGTAAATCATATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-'50-71,'50-70,56-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.411 A=0.955 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAATACATCGTTGTACAAAATGC
R:
CATCATATGATTTACATAGGCTTTGC
Band lengths:
270-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains