MmuEX6044265 @ mm10
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:48548558-48554109:-
Coord C1 exon
chrX:48553978-48554109
Coord A exon
chrX:48550052-48550359
Coord C2 exon
chrX:48548558-48548695
Length
308 bp
Sequences
Splice sites
3' ss Seq
ACCCTGGTTTGTTTTCACAGGTT
3' ss Score
9.76
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
AAAAAAGGAATTTATCGTTGCCCGAAATGCAGACTACAATTTTTGACCTCCAAGGAGAAAACAGAACATAAGTTAGAACATCGCACATTTATAAAGCCTAAAGAACTAGAGGGATTGCCTCCTGGGACAAAA
Seq A exon
GTTATTATTCGAGCTTCATTAGGATCTAGTCAGTCAAGAGCCTCAAGCCCACCTTCTAGTACCATCCCAAGCACTTCTCTTCAGCTCTCAGTTCCAAAGTCTAAAAGTACAACTACTAAGAATAACTCAAAAGTATCTGCAAATAAAGCTACCACCACTAGCCCTCAAACAGTTGCAACCACAACTGGTAAGCCCAGTGCAAGTAAGCCAGGTACGGGGACAACTAAATCCAAAGCCAAGCCCTCCTACAAGCAAAAGAGACAACGCACCAGGAAAAACAAATTCAGCATAGATCTGAAGAACTTAAG
Seq C2 exon
GTGTCACCAGGGAAGTCACATGTGTATTGAGTGCCGTTCCAAAATAAAAGATTTTTCAAGCCACTTTTCTACACATATAAATTGTGATTTTTGCAAGTATACCACTAACTGTAACAAAGCCTTTACAAATCATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916-'24-32,'24-31,26-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.948 C2=0.072
Domain overlap (PFAM):
C1:
PF0164113=SelR=PD(55.1=86.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGAATTTATCGTTGCCCG
R:
TGATTTGTAAAGGCTTTGTTACAGT
Band lengths:
262-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types