RnoEX6026995 @ rn6
Exon Skipping
Gene
ENSRNOG00000006797 | Zfp280c
Description
zinc finger protein 280C [Source:RGD Symbol;Acc:1564669]
Coordinates
chrX:135375302-135380847:-
Coord C1 exon
chrX:135380716-135380847
Coord A exon
chrX:135376806-135377128
Coord C2 exon
chrX:135375302-135375439
Length
323 bp
Sequences
Splice sites
3' ss Seq
ATCCTGATTTGATTTCATAGGTT
3' ss Score
8.17
5' ss Seq
ACGGTACGA
5' ss Score
9.65
Exon sequences
Seq C1 exon
AAAAAAGGAATTTATCGTTGCCCAAAATGCAGACTACAATTTTTGACCTCCAAGGAGAAAATAGATCATAAGTTAGAACATCGTACATTTATAAAGCCTAAAGAACTAGAAGGATTGCCTCCTGGAACAAAA
Seq A exon
GTTACTATTCGAGCTTCCTTAGGATCTATTCAATCACGATCGTCAAGCCCGCCTTCTAGTACTATCCCAAGCACTTCTCTTCAGCTCTCAGTCCCAAAGTCTAAAACAACTACTACTAAGAATACAACTACTAAGAATAACTCAAAAGTGTCCGCAAATAAAGTTACCACAACTAGCCCTCAAACAATGTCAACCACGACTGGTAAGACCAATGCAAGTAAGCCAGGTACAGGTACAACTAAATCCAAAGCCAAGCCGTCCAACAAGCAAAAGAGACAGCGCACCAGGAAAAACAAATTCAGCATAGATTTGAGGAACTTACG
Seq C2 exon
GTGTCACCAGGGAACTCACACGTGTATTGAGTGCCATTCCAAAATAAAAGATTTTTCAAGCCACTTTTCTACATATATAAATTGTGATTTTTGCAAGTATACCACTAACTGTAACAAAGCCTTTACAAATCATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006797-'21-20,'21-18,22-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.968 C2=0.085
Domain overlap (PFAM):
C1:
PF0164113=SelR=PD(55.7=88.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGAATTTATCGTTGCCCAA
R:
TGATTTGTAAAGGCTTTGTTACAGT
Band lengths:
262-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]