RnoEX6026996 @ rn6
Exon Skipping
Gene
ENSRNOG00000006797 | Zfp280c
Description
zinc finger protein 280C [Source:RGD Symbol;Acc:1564669]
Coordinates
chrX:135373698-135377128:-
Coord C1 exon
chrX:135376806-135377128
Coord A exon
chrX:135375302-135375439
Coord C2 exon
chrX:135373698-135373760
Length
138 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCCATCTCCATAAGGTG
3' ss Score
5.11
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTTACTATTCGAGCTTCCTTAGGATCTATTCAATCACGATCGTCAAGCCCGCCTTCTAGTACTATCCCAAGCACTTCTCTTCAGCTCTCAGTCCCAAAGTCTAAAACAACTACTACTAAGAATACAACTACTAAGAATAACTCAAAAGTGTCCGCAAATAAAGTTACCACAACTAGCCCTCAAACAATGTCAACCACGACTGGTAAGACCAATGCAAGTAAGCCAGGTACAGGTACAACTAAATCCAAAGCCAAGCCGTCCAACAAGCAAAAGAGACAGCGCACCAGGAAAAACAAATTCAGCATAGATTTGAGGAACTTACG
Seq A exon
GTGTCACCAGGGAACTCACACGTGTATTGAGTGCCATTCCAAAATAAAAGATTTTTCAAGCCACTTTTCTACATATATAAATTGTGATTTTTGCAAGTATACCACTAACTGTAACAAAGCCTTTACAAATCATATGAG
Seq C2 exon
CTCTCACAATGACCACCCAAGTAAGCAGCTTTGTATTTTTAAGAAGCATTCACGAGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006797-'22-21,'22-20,23-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=0.085 C2=0.159
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATAACTCAAAAGTGTCCGCA
R:
TGAGAGCTCGTGAATGCTTCT
Band lengths:
252-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]