HsaEX6053322 @ hg19
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:25955]
Coordinates
chrX:129343627-129350075:-
Coord C1 exon
chrX:129349765-129350075
Coord A exon
chrX:129349167-129349307
Coord C2 exon
chrX:129343627-129343689
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCCGTCTCCATAAGGTG
3' ss Score
7.3
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTACTATTCGAGCTTCACTTGGACCTCTCCAGTCAAAATTACCAACTGCACCTTTCGGTTGCGCTCCAGGCACTTCTTTTCTTCAGGTCACACCTCCGACATCTCAAAATACAACTGCTAGAAATCCTAGAAAATCTAATGCCAGTAGATCTAAGACAAGTAAGCTTCATGCAACTACATCCACTGCAAGTAAAGTTAATACAAGTAAGCCAAGGGGACGTATAGCTAAGTCCAAAGCAAAACCCTCTTACAAGCAAAAGCGACAGCGCAACAGAAAAAATAAAATGAGCCTTGCTTTGAAGAACATAAG
Seq A exon
GTGTCGTCGGGGAATTCACAAGTGCATTGAATGTCATTCCAAAATAAAAGATTTTGCAAGCCACTTTTCTATATACATCCACTGCAGTTTTTGCAAGTACAATACTAACTGTAACAAAGCCTTTGTAAATCATATGATGAG
Seq C2 exon
CTCTCATAGCAACCATCCAGGTAAACGGTTTTGTATTTTCAAGAAGCATTCAGGAACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277-'15-15,'15-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.752 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139091=zf-H2C2_5=WD(100=43.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACACCTCCGACATCTCA
R:
CCTGGATGGTTGCTATGAGAG
Band lengths:
246-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)