DreEX6042122 @ danRer10
Exon Skipping
Gene
ENSDARG00000076542 | pogzb
Description
pogo transposable element with ZNF domain b [Source:ZFIN;Acc:ZDB-GENE-100609-3]
Coordinates
chr16:38179590-38180480:+
Coord C1 exon
chr16:38179590-38179786
Coord A exon
chr16:38179880-38180020
Coord C2 exon
chr16:38180430-38180480
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCTGGTTCTCTTCTTTCCAGGGC
3' ss Score
10.58
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGACCATTAGGGCATATGTTGGGAAAAAAACACCAGGTCAGTCAGCTTCAAAAGCATCCACTAATATTCAGAAGAATAGTATTAGCAGTTCACAATCGACAACTCTAAGTGGCGACCAGCAATCAGAACAACAGCAATCTGGGAAGAAACAGGTCAGCAAGATGTTTCAGTTCCTGTCCAAGTTCCAGGAGCAGAG
Seq A exon
GGCTCAACTGGGCAGACATAAGTGTGTGGAGTGCACTTTTGACATTCCAGACTTTGTGAATCACTACCCCACTTATGTTCACTGTTCACTCTGCTTCTATAGCACGTGCTGTTCTCGTGCTTATGCAAATCACATGATCAA
Seq C2 exon
CAATCATGTTCCTGGAAGGGCTCCAAAACCTTCTAAAAAGGGGCCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076542-'27-31,'27-29,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTAGGGCATATGTTGGGA
R:
CTTGGAGGCCCCTTTTTAGAAG
Band lengths:
245-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]