HsaEX6033498 @ hg38
Exon Skipping
Gene
ENSG00000143442 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr1:151407235-151408581:-
Coord C1 exon
chr1:151408409-151408581
Coord A exon
chr1:151408100-151408240
Coord C2 exon
chr1:151407235-151407291
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCCCCCACAGGAG
3' ss Score
13.16
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGACAATCCGGGCTTCCCGAGGGCAGCCACGAACTGTTCCTGTATCCTCTAATGATACACCTCCCAGCGCCTTGCAGGAGGCAGCACCGCTGACCTCCTCAATGGACCCTCTGCCTGTCTTCCTTTATCCCCCTGTCCAGCGCAGCATCCAGAAGAGAGCTGTTAGGAAAAT
Seq A exon
GAGTGTCATGGGCCGGCAGACATGCCTGGAGTGCAGCTTCGAGATCCCAGACTTCCCTAATCATTTCCCTACTTACGTACACTGCTCTCTGTGTCGCTATAGCACCTGCTGTTCTCGAGCTTATGCCAACCACATGATCAA
Seq C2 exon
CAATCATGTTCCACGGAAGAGCCCCAAGTATTTGGCTTTGTTTAAAAATTCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143442-'53-56,'53-54,54-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAATCCGGGCTTCCC
R:
CTCACAGAATTTTTAAACAAAGCCA
Band lengths:
230-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains