BtaEX6015028 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19405394-19406398:+
Coord C1 exon
chr3:19405394-19405566
Coord A exon
chr3:19405723-19405863
Coord C2 exon
chr3:19406342-19406398
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTGTTTCTCAACAGGAG
3' ss Score
12.54
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTGACAATCCGGGCTTCCCGAGGGCAGCCACGAACTGCTCCTGTACCCTCCAGTGATGGACCTCCTGGCAGCTTGCAGGAAGCAGCACCACTGGCCTCCTCAGCAGACCCTCTGCCCGTCTTCCTTTACCCCCCTGTGCAGCGCAACGTCCAGAAGAGAGCTGTTAGGAAAAT
Seq A exon
GAGTGTCATGGGCCGGCAGACGTGTCTGGAGTGCAGCTTTGAGATCCCAGACTTCCCCAATCATTTCCCTACTTACGTTCATTGCTCTCTGTGTCGCTATAGTACCTGCTGTTCTCGAGCTTACGCCAACCATATGATCAA
Seq C2 exon
CAATCATGTTCCACGGAAGAGCCCCAAGTATTTGGCTTTGTTTAAAAATTCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAATCCGGGCTTCCC
R:
CTCACAGAATTTTTAAACAAAGCCA
Band lengths:
230-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]