GgaEX1044941 @ galGal4
Exon Skipping
Gene
ENSGALG00000024479 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr25:2080675-2082131:+
Coord C1 exon
chr25:2080675-2080844
Coord A exon
chr25:2081426-2081566
Coord C2 exon
chr25:2082072-2082131
Length
141 bp
Sequences
Splice sites
3' ss Seq
CCGCATCCCTCTCTTCTCAGGAG
3' ss Score
9.12
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTGACAATCAGAGCATCCCGAGGACAGCCCCGGACAGTGCCCATCTCTTCAAACGACATGGGGCAGAGTGCTGGGCAGGACACTGCGCCGCTCTCCTCTTCTGACCCTCAGCCCATCTTCCTGTACCCACCCGTCCAGAGGAGCGTCCAGAAGAGAGCCGTCAAAAAAAT
Seq A exon
GAGCGTCCTGGGCAGGCAGACCTGCCTGGAGTGCAGCTTTGAGATCCCCGACTTCCCGAACCACTTCCCCACCTACGTCCACTGCTCGCTGTGCCGCTACAGCACGTGCTGCTCCCGAGCCTACGCCAACCACATGATAAA
Seq C2 exon
CAACCACGTTCCCCGGAAGAGTCCCAAATACTTGGCTTTGTTCAAGAACTACACTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.544 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAATCAGAGCATCCCGA
R:
GCAGTGTAGTTCTTGAACAAAGCC
Band lengths:
227-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]