RnoEX6010508 @ rn6
Exon Skipping
Gene
ENSRNOG00000053599 | Pogz
Description
pogo transposable element derived with ZNF domain [Source:RGD Symbol;Acc:1309980]
Coordinates
chr2:196035949-196037111:+
Coord C1 exon
chr2:196035949-196036118
Coord A exon
chr2:196036268-196036408
Coord C2 exon
chr2:196037055-196037111
Length
141 bp
Sequences
Splice sites
3' ss Seq
GACATTTTTATTTTTGACAGGAG
3' ss Score
6.71
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGACAATCCGGGCTTCCAGGGGGCAGCCACGAACTGTTCCTGTGTCTTCAAATGATGCACCTTCTGGCGCTTTGCAGGAGGCAGCACCACTGACCTCCGCTGACCCCCTACCTGTCTTCCTTTACCCTCCCGTCCAACGCAATGTCCAGAAGAGAGCTGTCAGGAAAAT
Seq A exon
GAGCGTCATGGGCCGGCAGACGTGTCTGGAGTGCAGCTTTGAGATTCCAGATTTCCCTAACCATTTCCCTACCTACGTGCACTGTTCTCTCTGTCGCTATAGCACCTGCTGCTCTCGAGCTTATGCCAATCACATGATCAA
Seq C2 exon
CAATCATGTTCCACGGAAGAGTCCCAAGTATCTGGCTTTGTTTAAAAATTTTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053599-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAATCCGGGCTTCCAG
R:
TTTTTAAACAAAGCCAGATACTTGGG
Band lengths:
218-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]