MmuEX6044266 @ mm10
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:48547265-48550359:-
Coord C1 exon
chrX:48550052-48550359
Coord A exon
chrX:48548558-48548695
Coord C2 exon
chrX:48547265-48547327
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCTGTCTCTATAAGGTG
3' ss Score
8.72
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTATTATTCGAGCTTCATTAGGATCTAGTCAGTCAAGAGCCTCAAGCCCACCTTCTAGTACCATCCCAAGCACTTCTCTTCAGCTCTCAGTTCCAAAGTCTAAAAGTACAACTACTAAGAATAACTCAAAAGTATCTGCAAATAAAGCTACCACCACTAGCCCTCAAACAGTTGCAACCACAACTGGTAAGCCCAGTGCAAGTAAGCCAGGTACGGGGACAACTAAATCCAAAGCCAAGCCCTCCTACAAGCAAAAGAGACAACGCACCAGGAAAAACAAATTCAGCATAGATCTGAAGAACTTAAG
Seq A exon
GTGTCACCAGGGAAGTCACATGTGTATTGAGTGCCGTTCCAAAATAAAAGATTTTTCAAGCCACTTTTCTACACATATAAATTGTGATTTTTGCAAGTATACCACTAACTGTAACAAAGCCTTTACAAATCATATGAG
Seq C2 exon
CTCTCACAATGACCACCCAAGTAAGCAGCTTTATATTTTTAAGAAGCAATCACGAGCTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916-'26-33,'26-32,27-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.948 A=0.072 C2=0.455
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTCTCAGTTCCAAAGTCT
R:
GCTGCTTACTTGGGTGGTCAT
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types