BtaEX0041201 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019885 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:14039557-14047164:-
Coord C1 exon
chrX:14046851-14047164
Coord A exon
chrX:14046245-14046382
Coord C2 exon
chrX:14039557-14039619
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTGTCTCCATAAGGTG
3' ss Score
8.06
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTCACTATCCGAGCTTCAATTGAATCTCTTCATTCAGGACCATCAACTTCCAAGAGTATTCTATCTTCCAGTACTTCTTCAAGCACTTGTCTTCAGGTCTCACCTTCAACGTCTAAAACTACAACTACTGGAAGTTCTCCAAGATCTAATGCAAATGAATATAAGACAAGAGAGTTTAGTGCAACTACATCCACTGAAAGTAAGCCTAGTACAAGTAAGGAACGTGCAGCTAAATGCAGAGCAAAAACCTCTTACAAGCCAAAGAAAAAGCGCAACAGGAGAAATAAAATCAGCGTAGCTTTGAAGAACTTAAG
Seq A exon
GTGTCGGGGAGTATACACGTGCATTGAATGTCATACCAAAATAAAAGATTTTGCAAGCCACTTTTCATTATTTACGCGCTGTAATTTTTGCAAATACAGCACTAACTGTAACAAAGCCTTTGTTAATCATATGCTGAG
Seq C2 exon
CTCTCATACCAGCCAGCCAGCTAAACGAGTCTCTATTTTTAAGAAGCGTTGTAGAACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019885_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTGTCTTCAGGTCTCACC
R:
TTAGCTGGCTGGCTGGTATGA
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development