BtaEX6004863 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019885 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:14035977-14046382:-
Coord C1 exon
chrX:14046245-14046382
Coord A exon
chrX:14039557-14039619
Coord C2 exon
chrX:14035977-14036098
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTTGTCTTTCTAGCTC
3' ss Score
10.39
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTGTCGGGGAGTATACACGTGCATTGAATGTCATACCAAAATAAAAGATTTTGCAAGCCACTTTTCATTATTTACGCGCTGTAATTTTTGCAAATACAGCACTAACTGTAACAAAGCCTTTGTTAATCATATGCTGAG
Seq A exon
CTCTCATACCAGCCAGCCAGCTAAACGAGTCTCTATTTTTAAGAAGCGTTGTAGAACTCTCAG
Seq C2 exon
TAGGGGCATTACTCTAGTGTGCCTTAAATGTGATTTCCTGGCTGATTCTTCTACTCTGGATCGTATGGCTAAACACTTAAGTCAACGTAAAACTCACACTTGCCAAGTTATTATAGAGACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019885-'16-17,'16-16,17-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGCATTGAATGTCATACCA
R:
GGCACACTAGAGTAATGCCCC
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]