HsaEX6053323 @ hg19
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:25955]
Coordinates
chrX:129339271-129349307:-
Coord C1 exon
chrX:129349167-129349307
Coord A exon
chrX:129343627-129343689
Coord C2 exon
chrX:129339271-129339389
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCGTGTTTCTCCAGCTC
3' ss Score
9.81
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGTCGTCGGGGAATTCACAAGTGCATTGAATGTCATTCCAAAATAAAAGATTTTGCAAGCCACTTTTCTATATACATCCACTGCAGTTTTTGCAAGTACAATACTAACTGTAACAAAGCCTTTGTAAATCATATGATGAG
Seq A exon
CTCTCATAGCAACCATCCAGGTAAACGGTTTTGTATTTTCAAGAAGCATTCAGGAACTCTCAG
Seq C2 exon
GGGCATTACTCTAGTGTGCCTTAAATGTGATTTCCTAGCTGATTCTTCCGGCTTAGATCGTATGGCTAAACACTTAAGTCAACGTAAAACTCATACTTGCCAAGTTATAATAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277-'16-16,'16-15,18-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=WD(100=43.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTTGCAAGCCACTTTTCT
R:
AGCCGGAAGAATCAGCTAGGA
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)