DreEX0088061 @ danRer10
Exon Skipping
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52468880-52472694:+
Coord C1 exon
chr7:52468880-52469020
Coord A exon
chr7:52469101-52469163
Coord C2 exon
chr7:52472576-52472694
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTGGTCTTTATTACTCTCAGGTT
3' ss Score
7.29
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
ACTTCCAAAGGGAGATAATAAGTGTATGGAGTGTCTCCATGATGTTGTGGACCCCTACATACATTATCCGTTATCGCTGAAGTGCAATAAATGCAAGTACAGATCAAGCTGCCAGAAAGCCTTCAGACAGCATATGATCAG
Seq A exon
GTTTCACCAGAATTCTACTAAAGTGCGGGTTGGCAAAGTGAAAAATCCTCCACGTGGTGTGCG
Seq C2 exon
GAGTCTAACACTTGTGTGTCTCAAGTGTGACTTTCTGGCAGACGCTTCTGGTGCAGATAAGATGACTGAACATTTGCTCAGCAGGTCGAACCACTCCTGCCAGGTCATCATGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013-'22-25,'22-24,23-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.545 C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAAGCTGCCAGAAAGCCT
R:
GGTTCGACCTGCTGAGCAAAT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]