RnoEX0101215 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78910707-78925180:+
Coord C1 exon
chr8:78910707-78910847
Coord A exon
chr8:78921276-78921338
Coord C2 exon
chr8:78925062-78925180
Length
63 bp
Sequences
Splice sites
3' ss Seq
TATCATTTTTATCTTTCCAGCTT
3' ss Score
9.11
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTACGTCGGGGTGTTCACGAGTGTATTGAGTGTTCTTCTGAAGTAAAAGATTTTGCAAACCATTTTCCTACATATGTCCACTGTAGTTTTTGCAGATATAACACTAGCTGTAGCAAAGCCTATGTAAATCATATGATGAG
Seq A exon
CTTTCACAGTAACCGTCCAAGTAAAAGATATTGTATATTTAAGAAGCATTCAGAAAATCTCAG
Seq C2 exon
GGGCATTTCTCTAGTGTGCCTTAATTGTGATTTCCTAACTGACGTTTCTGGCTTAGATAATATGGCCACACACTTAAGTCAACATGAAACTCATACTTGCCAAGTTCTAGTAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631_MULTIEX2-8/14=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGAGTGTATTGAGTGTTCT
R:
AGGCACACTAGAGAAATGCCC
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]