GgaEX1003108 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:8659260-8661790:+
Coord C1 exon
chr10:8659260-8659400
Coord A exon
chr10:8661118-8661180
Coord C2 exon
chr10:8661672-8661790
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTGTTTTTTTTTTAGTTT
3' ss Score
10.54
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTGTCGTTTGGGAGCTCACAAATGCATTGAGTGTTACTCAGAAATAAAAGATTTTGCAAGCCACTTTCCTGCGTATGTCCATTGTAGCTTATGCAGATACAATACTAGCTGTAGCAAAGCCTATGTGAATCACATGATGAG
Seq A exon
TTTTCACAGTGCTCGTCCAAGTAAAAGATTTTGGATATACAAGAAGCATTCAGAAGATCTAAG
Seq C2 exon
AGGTGTGACTGTAGTATGTCTTAACTGTGATTTTCTGACTGATGGTTCTGGCTTAGATAGGATGGCCACACATCTGAGTGAAAGCCATACTCATGCTTGTCAAGTTATTATAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375-'17-22,'17-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACTTTCCTGCGTATGTC
R:
AGCCAGAACCATCAGTCAGAA
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]