HsaEX0073333 @ hg38
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr15:56642952-56666535:-
Coord C1 exon
chr15:56666395-56666535
Coord A exon
chr15:56658424-56658486
Coord C2 exon
chr15:56642952-56642997
Length
63 bp
Sequences
Splice sites
3' ss Seq
TATCTCTTTTGTTTCTCCAGCTT
3' ss Score
9.14
5' ss Seq
CCGGTAACT
5' ss Score
6.39
Exon sequences
Seq C1 exon
GTATCGTCGGGGCATTCACAAATGCATTGAGTGTTGTTCCGAAATAAAAGATTTTGCAAACCACTTTCCTACGTACGTCCACTGTAGTTTTTGCAGATACAACACTAGCTGTAGCAAAGCCTATGTAAATCATATGATGAG
Seq A exon
CTTTCATAGTAACCGTCCAAGCAAAAGGTTTTGTATTTTTAAGAAGCATTCAGAAAATCTCCG
Seq C2 exon
ATTAAAAAAAGAAGCTCCCGCAAAGGAACAAGAACCTGTGTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871_MULTIEX1-2/6=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.922
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTTGCAAACCACTTTCCTACGT
R:
CACAGGTTCTTGTTCCTTTGCG
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development