BtaEX6053526 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53794382-53804643:+
Coord C1 exon
chr10:53794382-53794522
Coord A exon
chr10:53800292-53800354
Coord C2 exon
chr10:53804525-53804643
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATCTATTTTGTCTCTTTCAGCTT
3' ss Score
11.17
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTATCGTCGGGGAGTTCACAAGTGCATTGAGTGTTATTCTGAAATAAAAGATTTTGCAAACCACTTTCCTACATATGTCCACTGTAGTTTTTGCAGATACAACACTAGCTGTAGCAAATCCTATGTGAATCATATGATGAG
Seq A exon
CTTTCATAGTAATCGTCCAAGTAAAAGGTTTTGTATCTTTAAGAAGTATTCAGAAGATCTCAG
Seq C2 exon
GGGCATTACTCTAGTGTGCCTTAATTGTGACTTCCTAACTGATGTTTCTGGCTTAGATAATATGGCTACACACTTAAGTCAACATGAAACTCATGCTTGTCAAGTTGTAATAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486-'29-29,'29-28,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCACAAGTGCATTGAGTGT
R:
GGCACACTAGAGTAATGCCC
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]