HsaEX0073333 @ hg19
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56946583-56958733:-
Coord C1 exon
chr15:56958593-56958733
Coord A exon
chr15:56950622-56950684
Coord C2 exon
chr15:56946583-56946701
Length
63 bp
Sequences
Splice sites
3' ss Seq
TATCTCTTTTGTTTCTCCAGCTT
3' ss Score
9.14
5' ss Seq
CCGGTAACT
5' ss Score
6.39
Exon sequences
Seq C1 exon
GTATCGTCGGGGCATTCACAAATGCATTGAGTGTTGTTCCGAAATAAAAGATTTTGCAAACCACTTTCCTACGTACGTCCACTGTAGTTTTTGCAGATACAACACTAGCTGTAGCAAAGCCTATGTAAATCATATGATGAG
Seq A exon
CTTTCATAGTAACCGTCCAAGCAAAAGGTTTTGTATTTTTAAGAAGCATTCAGAAAATCTCCG
Seq C2 exon
GGGCATTACTCTAGTGTGCCTTAATTGTGATTTCCTAAGTGATGTTTCTGGCTTAGATAATATGGCTACACACTTAAGTCAACATAAAACTCATACTTGCCAAGTTGTAATGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-'21-24,'21-22,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTTTCCTACGTACGTCCA
R:
AGCCAGAAACATCACTTAGGAA
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)