MmuEX6044267 @ mm10
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:48543585-48548695:-
Coord C1 exon
chrX:48548558-48548695
Coord A exon
chrX:48547265-48547327
Coord C2 exon
chrX:48543585-48543703
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTTTGTCTTTAATCTCTCAGCTC
3' ss Score
6.91
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGTCACCAGGGAAGTCACATGTGTATTGAGTGCCGTTCCAAAATAAAAGATTTTTCAAGCCACTTTTCTACACATATAAATTGTGATTTTTGCAAGTATACCACTAACTGTAACAAAGCCTTTACAAATCATATGAG
Seq A exon
CTCTCACAATGACCACCCAAGTAAGCAGCTTTATATTTTTAAGAAGCAATCACGAGCTCGCAG
Seq C2 exon
GGGCATCACTCTAGTGTGCCTTAAATGTGACTTCCTAGCCGATACTTCTGGCTTAGACCGTATGGCTAAACACTTAAATCAACGTAAAACTCATACTTGCCAAGTTGTAATAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916-'27-35,'27-33,28-35=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.455 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTATTGAGTGCCGTTCCA
R:
TCACATTTAAGGCACACTAGAGT
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types