BtaEX6005954 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013760 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chrX:61091570-61093360:-
Coord C1 exon
chrX:61093316-61093360
Coord A exon
chrX:61092773-61092826
Coord C2 exon
chrX:61091570-61091639
Length
54 bp
Sequences
Splice sites
3' ss Seq
TAACTATGTTTCTTTCACAGGGC
3' ss Score
10.9
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGTCCCATGGGTTTAGAAGGAGTCCAAGGCCCTCCGGGGAGTCAG
Seq A exon
GGCAGGAAGGGGTCTTCAGGTTTCCCCGGGCTTAATGGATTCCCAGGAATTAAG
Seq C2 exon
GGTGAAAAAGGTGGCATTGGCCTGCCAGGCCCAGATATTTTCATCGATACAGATGGTGCTGTGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013760-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.2=100)
A:
PF0139113=Collagen=FE(27.0=100)
C2:
PF0139113=Collagen=PD(17.5=45.8),PF0139113=Collagen=PU(1.6=4.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCATGGGTTTAGAAGGAG
R:
TCACAGCACCATCTGTATCGA
Band lengths:
109-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]