MmuEX6046139 @ mm10
Exon Skipping
Gene
ENSMUSG00000031273 | Col4a6
Description
collagen, type IV, alpha 6 [Source:MGI Symbol;Acc:MGI:2152695]
Coordinates
chrX:141206130-141207497:-
Coord C1 exon
chrX:141207453-141207497
Coord A exon
chrX:141206911-141206964
Coord C2 exon
chrX:141206130-141206199
Length
54 bp
Sequences
Splice sites
3' ss Seq
TACCTATGTTTCTATTACAGGGA
3' ss Score
9.93
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGTCCCATGGGTTCAGAAGGAATACAAGGCCATCCAGGGAGACAG
Seq A exon
GGAAAGAAGGGGACTTCAGGTTTTCCTGGGATTAACGGGTTCCCAGGAATTAAG
Seq C2 exon
GGTGAAAAGGGAGACATTGGTGTTCGAGGCCCAGACAGTTTCACTGATGCAGATGGCGCTGTGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031273-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.5=100)
A:
PF0139113=Collagen=FE(26.2=100)
C2:
PF0139113=Collagen=PD(20.0=54.2),PF0139113=Collagen=PU(1.6=4.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCATGGGTTCAGAAGGA
R:
CTGAGATCACAGCGCCATCTG
Band lengths:
115-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types