GgaEX0011963 @ galGal4
Exon Skipping
Gene
ENSGALG00000008266 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chr4:14036042-14036968:+
Coord C1 exon
chr4:14036042-14036086
Coord A exon
chr4:14036320-14036373
Coord C2 exon
chr4:14036899-14036968
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCCTGCGTGTGACTTTGCAGGGT
3' ss Score
9.07
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GGTCTTTTGGGGCTGGATGGATCCAATGGCATTCCAGGGAGAAAG
Seq A exon
GGTCATCCAGGTATTCCAGGCTATCCAGGACTGGATGGAGTTGAAGGCACGAAG
Seq C2 exon
GGTGAAATAGGTGACATCGGTCCCCCAGGCCCTCCTATCGTTGTTGACAAGGAAGGTGTAGTAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008266_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.3=100)
A:
PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=PD(18.3=45.8),PF0139113=Collagen=PU(11.6=20.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTTTGGGGCTGGATGG
R:
TACTACACCTTCCTTGTCAACAACG
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]