RnoEX6026596 @ rn6
Exon Skipping
Gene
ENSRNOG00000056772 | Col4a6
Description
collagen type IV alpha 6 chain [Source:RGD Symbol;Acc:1589724]
Coordinates
chrX:112445024-112446354:-
Coord C1 exon
chrX:112446310-112446354
Coord A exon
chrX:112445793-112445846
Coord C2 exon
chrX:112445024-112445093
Length
54 bp
Sequences
Splice sites
3' ss Seq
AACTATGTTTCTATCACCAGGGA
3' ss Score
8.88
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGTCCCGTGGGTTCAGAAGGAATACAAGGATATCCAGGGAAACAG
Seq A exon
GGAAAGAAGGGGACTTCAGGTTTTCCTGGGACTAACGGGTTCCCAGGAATTAAG
Seq C2 exon
GGTGAAAAGGGAAGCATTGGTGTGCGAGGCCCAGACAGTTTCACTGATGCAGAAGGCACTGTGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056772-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.2=100)
A:
PF0139113=Collagen=FE(27.0=100)
C2:
PF0139113=Collagen=PD(17.5=45.8),PF0139113=Collagen=PU(3.2=8.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGTGGGTTCAGAAGGAAT
R:
TGAGATCACAGTGCCTTCTGC
Band lengths:
112-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]