BtaEX6005967 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013760 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chrX:61072667-61074314:-
Coord C1 exon
chrX:61074171-61074314
Coord A exon
chrX:61073615-61073740
Coord C2 exon
chrX:61072667-61072848
Length
126 bp
Sequences
Splice sites
3' ss Seq
CATTACCTCCATCCCTGCAGGAG
3' ss Score
9.1
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTGAGAAGGGGTCTGTTGGACTGACAGGTTTTCCAGGGATTCCAGGTCTCCCTGGTATTCCTGGAGCAAGTGGATTAAAGGGAATTCCTGGGTCGACAGGAAGAGTGGGGCCATCTGGATGGGCTGGTAGCCCTGGTGAAAAAG
Seq A exon
GAGACAGAGGTGACCCAGGCCCCTTTGGGATACCCAGTCATCGACCTCCAATGCTGAACCTCCGCTTCAAAGGAGACAAAGGTTCTCAGGGCTCACCTGGAGCCATTGGATTTCCTGGACCCAGAG
Seq C2 exon
GTGACAAAGGAGAGGCTGGCCACCCCGGGCCACCAGGCTTGCCTGGAGCTCCTGGCTTCCCCAGCCTCATCAAGGGACTTAGTGGGAGACCAGGCCCCCCTGGCTCCACAGGACTACGGGGCTTACCTGGCCTGAAGGGGTACCCTGGAATTGCAGGTTTCCAAGGAATTCCAGGAGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013760-'30-29,'30-28,31-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.984
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(32.9=49.0),PF0139113=Collagen=PU(72.9=87.8)
A:
PF0139113=Collagen=PD(25.4=34.9),PF0139113=Collagen=PU(34.5=46.5)
C2:
PF0139113=Collagen=PD(63.8=60.7),PF0139113=Collagen=PU(56.9=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGGGATTCCAGGTCTCC
R:
TACCCCTTCAGGCCAGGTAAG
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]