RnoEX0023361 @ rn6
Exon Skipping
Gene
ENSRNOG00000056772 | Col4a6
Description
collagen type IV alpha 6 chain [Source:RGD Symbol;Acc:1589724]
Coordinates
chrX:112426614-112428386:-
Coord C1 exon
chrX:112428243-112428386
Coord A exon
chrX:112427234-112427359
Coord C2 exon
chrX:112426614-112426795
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCTGATCTACCTTCCTTCAGGAG
3' ss Score
9.45
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
Exon sequences
Seq C1 exon
GTGAAAAGGGGTCCTCTGGACCAGTAGGGTTTCCTGGGTTACCTGGTCTTCCTGGTCTTCCTGGAGCTGATGGATTAAAGGGATTTTCTGGGTCATTTGGAAAGGTGGGACAACCTGGACAGGCTGGTACTCCTGGAGAAAAAG
Seq A exon
GAGACAGGGGAGATCCAGGGCCAGTTGGCATATCTAGTCCAAGACCTCCAATGCTAAACCTTTGGTTCAAAGGAGAAAAAGGATCTCAAGGTTCTGCTGGATCAGATGGATTTCCTGGGCCCAGAG
Seq C2 exon
GTGACAAAGGAGAGCCTGGCATCCCAGGGTTACCAGGTGCACCTGGAGCTCCTGGACAGTCCAATACCATCAAAGGACTCAGTGGGAGTCCAGGTTCCCCTGGATCTATGGGAAGAAGGGGATTACCTGGCCTGAAGGGGTCTCTGGGGATTGCAGGTTTCCCAGGAATACCAGGAAAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056772-'26-27,'26-26,27-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(34.5=46.5)
C2:
PF0139113=Collagen=PD(64.4=62.3),PF0139113=Collagen=PU(56.7=62.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTCTTCCTGGTCTTCCT
R:
AATCCCCAGAGACCCCTTCAG
Band lengths:
255-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]