GgaEX7003666 @ galGal4
Exon Skipping
Gene
ENSGALG00000008266 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chr4:14049731-14050811:+
Coord C1 exon
chr4:14049731-14049874
Coord A exon
chr4:14050198-14050323
Coord C2 exon
chr4:14050630-14050811
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCAACTTCATATTTCTTCAGGTG
3' ss Score
8.5
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTGAAAAGGGATCTTCTGGCCTGCTTGGTTTCCCAGGCATGCCAGGCCTGCCTGGTGTCCCTGGGGTCAATGGGTTTAAAGGAACTCCTGGTGCAGTGGGAGAAAGAGGAAGCCCAGGAGTTCTGGGACTTCAAGGTCAAAAAG
Seq A exon
GTGACAGAGGCGATGTAGGTCCACCTGGTCTTCCTGTTCTTGGGGCTCAAGAACAGGCGCTGCAATTGAAAGGAGACAAAGGAGACCCTGGATTGGCTGGACTTGGAGGATTCCCAGGACCCAGAG
Seq C2 exon
GTGATAAAGGAATCCCAGGAAGCCGTGGGCAGCCTGGTCTACCTGGACCTGTTGGGTCAGCAAGCAGAGAGAGAGGTTTTCATGGTGACCAAGGCTTCCCTGGTCCATCTGGACAGCCTGGGCTGCCAGGACAGAAGGGTACACGTGGAATCATAGGATTTCCAGGAATGCCAGGAGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008266-'58-40,'58-39,59-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(17.9=24.5),PF0139113=Collagen=PU(78.7=98.0)
A:
PF0139113=Collagen=PD(17.5=25.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTGGCCTGCTTGGTTTC
R:
AGATGGACCAGGGAAGCCTTG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]