MmuEX6046150 @ mm10
Exon Skipping
Gene
ENSMUSG00000031273 | Col4a6
Description
collagen, type IV, alpha 6 [Source:MGI Symbol;Acc:MGI:2152695]
Coordinates
chrX:141187665-141189490:-
Coord C1 exon
chrX:141189347-141189490
Coord A exon
chrX:141188289-141188414
Coord C2 exon
chrX:141187665-141187846
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTGATCTGCCTTCCTTCAGGAG
3' ss Score
10.7
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
Exon sequences
Seq C1 exon
GTGAAAAGGGGTCCTCTGGACCAGTAGGATTTCCTGGGTTACCTGGTCTTCCTGGTCTTCCTGGAGCTGATGGATTAAAGGGATTTTCTGGGTCATTTGGAAAGGTGGGACAACCTGGACAGACTGGTACTTCCGGAGAAAAAG
Seq A exon
GAGACAGAGGGGATCCAGGGCCAGTTGGCATATCTAGTCCAAGACCTCCAATGCTAAACCTTTGGTTCAAAGGAGAAAAAGGCTCTCGAGGTTCTGCTGGATCGGATGGATTTCCTGGGCCCAGAG
Seq C2 exon
GTGACAAAGGAGAGCCTGGCATCCCAGGGTTACCAGGTCCACCTGGAGCTACTGGACAAACCAATACCATCAAAGGGCTCAATGGGAGGCCAGGTTCTCCTGGATCTATGGGAAGAAGGGGATTACCTGGCCTGAAGGGGTCTCTTGGGATTGCAGGTTTCCCAGGAATGCCAGGGAAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031273-'36-41,'36-40,37-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(32.9=55.1),PF0139113=Collagen=FE(72.7=100)
A:
PF0139113=Collagen=PD(21.2=32.6),PF0139113=Collagen=PU(33.9=46.5)
C2:
PF0139113=Collagen=PD(64.4=62.3),PF0139113=Collagen=PU(56.1=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTCTTCCTGGTCTTCCT
R:
ATCCCAAGAGACCCCTTCAGG
Band lengths:
254-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types