BtaEX6005995 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014575 | COL4A5
Description
collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:HGNC:2207]
Coordinates
chrX:61754951-61769739:+
Coord C1 exon
chrX:61754951-61755048
Coord A exon
chrX:61757260-61757410
Coord C2 exon
chrX:61769626-61769739
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTATCATGTGTATGCTCTAGGGA
3' ss Score
8.79
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTTTTCCTGGAATTCCAGGACCTCCAGGAGCACCTGGATCACCTGGAAGAATCGGTCTAGAAGGTCCTTCTGGGCCACCAGGCTTTCCAGGACCAAAG
Seq A exon
GGAGAACCAGGATTTGGGCTACCTGGGCCACCTGGGCCTCCAGGACTCCCAGGTTTCAAAGGAATACTTGGTCCAAAAGGGGATCGTGGTTTCCCAGGACCTCAAGGTCCTCCAGGACAAGCTGGCTTGGATGGGCTACCTGGACCAAAAG
Seq C2 exon
GTGACATTGGACCAAATGGACAACCTGGGCCAATTGGACCTCCTGGGCTGCCAGGAACAGGTTTTCAGGGACCACCAGGGCCACCAGGAATTCCTGGACCAATAGGCCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014575-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(64.0=100)
A:
PF0139113=Collagen=PD(10.0=9.8),PF0139113=Collagen=PU(82.1=90.2),PF0139113=Collagen=PU(5.1=5.9)
C2:
PF0139113=Collagen=PD(16.1=23.1),PF0139113=Collagen=FE(64.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATTCCAGGACCTCCAGG
R:
CAGGTTGGCCTATTGGTCCAG
Band lengths:
205-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]