MmuEX6046175 @ mm10
Exon Skipping
Gene
ENSMUSG00000031274 | Col4a5
Description
collagen, type IV, alpha 5 [Source:MGI Symbol;Acc:MGI:88456]
Coordinates
chrX:141616547-141626944:+
Coord C1 exon
chrX:141616547-141616644
Coord A exon
chrX:141618118-141618268
Coord C2 exon
chrX:141626831-141626944
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTGTCATGTGTATGCTTAAGGGA
3' ss Score
4.38
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTTTTCCAGGAATTCCGGGACCTCCAGGAGCTCCTGGGGCCCCTGGAAGAATGGGTCCAGATGGGCCTCCTGGGCCACCAGGCTTCCCAGGACCAAAG
Seq A exon
GGAGAGCCAGGATTTGGGTTACCTGGGCCACCTGGGCCACCAGGATTCCCAGGTTTCAAAGGAACACCTGGTCCAAAAGGTGATCGTGGTTTCCCAGGACCTTCAGGTCCTCCAGGACGCACTGGCTTGGATGGGCTACCTGGACCAAAAG
Seq C2 exon
GTGATGTTGGACCAAATGGACAACCTGGCCCAGTAGGGCCTCCAGGGCTGCCAGGAATTGGTCTTCAGGGACCACCAGGACCACCAGGGACTCCAGGGCCAATAGGCCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031274-'37-38,'37-37,39-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(55.2=100)
A:
PF0139113=Collagen=PD(24.1=27.5),PF0139113=Collagen=PU(69.7=90.2),PF0139113=Collagen=PU(9.5=11.8)
C2:
PF0139113=Collagen=PD(28.8=48.7),PF0139113=Collagen=FE(60.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATTCCGGGACCTCCAG
R:
CTATTGGCCCTGGAGTCCCTG
Band lengths:
196-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types