RnoEX0023343 @ rn6
Exon Skipping
Gene
ENSRNOG00000018951 | Col4a5
Description
collagen type IV alpha 5 chain [Source:RGD Symbol;Acc:1565499]
Coordinates
chrX:112923182-112932161:+
Coord C1 exon
chrX:112923182-112923279
Coord A exon
chrX:112924748-112924898
Coord C2 exon
chrX:112932048-112932161
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTGTCATGTGTATGCTTAAGGGA
3' ss Score
4.38
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTTTTCCAGGAATTCCTGGACCTCCAGGACCTCCTGGGGCCCCTGGAAGAATGGGCCCAGAAGGGCCTCCTGGGTTACCGGGCTTTCCAGGACCCAAG
Seq A exon
GGAGAGCCAGGATTTGGGTTACCTGGGCCACCTGGGCCACCAGGATTCCCAGGTTTCAAAGGAACACCTGGTCCAAAAGGTGATCGTGGTTTACCAGGACCTCCAGGTCCTCCAGGACACACTGGCTTGGATGGGCTACCTGGACCAAAAG
Seq C2 exon
GTGATGCTGGACCAAATGGACAACCTGGCCCAATAGGGCCACCAGGGCTGCCAGGAATTGGTCTTCAGGGACCACCAGGACCACCAGGGACTCCAGGGCCAATAGGCCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018951-'34-35,'34-33,35-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(55.2=100)
A:
PF0139113=Collagen=PD(24.1=27.5),PF0139113=Collagen=PU(70.1=92.2),PF0139113=Collagen=PU(9.5=11.8)
C2:
PF0139113=Collagen=PD(28.4=48.7),PF0139113=Collagen=FE(60.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATTCCTGGACCTCCA
R:
CTATTGGCCCTGGAGTCCCTG
Band lengths:
196-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]