DreEX6007360 @ danRer10
Exon Skipping
Gene
ENSDARG00000052063 | col4a5
Description
collagen, type IV, alpha 5 (Alport syndrome) [Source:ZFIN;Acc:ZDB-GENE-030131-2281]
Coordinates
chr7:50892525-50893816:+
Coord C1 exon
chr7:50892525-50892622
Coord A exon
chr7:50893443-50893593
Coord C2 exon
chr7:50893703-50893816
Length
151 bp
Sequences
Splice sites
3' ss Seq
AATGTGTATTTTCCCCATAGGGA
3' ss Score
10.78
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GATTTCCTGGTATTGCTGGTTCCCCTGGTGGACCTGGCATTCCTGGACGACCAGGTTTAGATGGACTGCCTGGTCAGCCTGGATTACCTGGATCCAAA
Seq A exon
GGAGATCCTGGTTATGGTCTGCCTGGTCCTCCAGGTCCCACAGGATCACCAGGCATTAAAGGTGGACCCGGTCCGAAAGGTGATTCTGGTTTCCCTGGAAGCCCTGGTCAACCAGGCCGCCCAGGTCTCGATGGGGCTCCTGGACCTAAAG
Seq C2 exon
GTGATGCTGGTTTTCCTGGTGGTCCTGGTCCTCGTGGCCCCCCTGGGGCTCCTGCTTTTGGTCTTCAGGGCCCTCCTGGTCCTCCTGGAGCTCCAGGCTCTATTGGATCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052063-'29-38,'29-37,31-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(65.3=100)
A:
PF0139113=Collagen=PD(10.2=9.8),PF0139113=Collagen=PU(70.8=90.2),PF0139113=Collagen=PU(8.5=11.8)
C2:
PF0139113=Collagen=PD(27.7=46.2),PF0139113=Collagen=FE(53.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTGGTATTGCTGGTTCCC
R:
CAGGAGATCCAATAGAGCCTGGA
Band lengths:
210-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]