BtaEX6006000 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014575 | COL4A5
Description
collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:HGNC:2207]
Coordinates
chrX:61747447-61750509:+
Coord C1 exon
chrX:61747447-61747539
Coord A exon
chrX:61749963-61750033
Coord C2 exon
chrX:61750318-61750509
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGTGTATGTGTGTGTATTAGGAT
3' ss Score
9.06
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGACAAAGGTGACACCTGCTTCAACTGTATTGGAACTGGTGTTTCAGGGCCTCCAGGTCAGCCTGGTTTGCCAGGTCTTCCAGGTCCCCCAG
Seq A exon
GATCTCTTGGTTTCCCTGGACAGAAGGGCGAAAAAGGACATGCTGGTGCAACTGGTCCCAAAGGATTATCA
Seq C2 exon
GGCATACCAGGAGCTCCAGGTGCTCCAGGCTTTCCTGGACCTAAAGGTGAACCCGGTGACATCCTCACATTTCCAGGAATGAAGGGTGACAAAGGAGATTTGGGTTCCCCTGGAGCTCCAGGGCTTCCTGGTTTACCTGGCACCCCTGGACAGGATGGATTGCCAGGACTTCCTGGCCCCAAAGGAGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014575-'22-25,'22-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(30.9=78.1),PF0139113=Collagen=PU(29.2=59.4)
A:
PF0139113=Collagen=FE(35.4=100)
C2:
PF0139113=Collagen=PD(32.3=32.8),PF0139113=Collagen=PU(70.7=64.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCCAGGTCTTCCAGGTC
R:
GGTGCCAGGTAAACCAGGAAG
Band lengths:
171-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]