MmuEX6046181 @ mm9
Exon Skipping
Gene
ENSMUSG00000031274 | Col4a5
Description
collagen, type IV, alpha 5 [Source:MGI Symbol;Acc:MGI:88456]
Coordinates
chrX:138044366-138047155:+
Coord C1 exon
chrX:138044366-138044458
Coord A exon
chrX:138045718-138045788
Coord C2 exon
chrX:138046964-138047155
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTGACCTATGTGTGTCTTAGGAT
3' ss Score
9.56
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
Exon sequences
Seq C1 exon
GTGACAAAGGTGATACTTGCTTCAACTGTATTGGAACTGGCATTTCAGGGCCTCCAGGCCAACCTGGTTTACCAGGTCTCCCAGGTCCTCCAG
Seq A exon
GATCTCTTGGAATCCCTGGAGAGAAGGGGGACAAAGGACAAGCTGGGATAACTGGTCCGAAAGGATTGCCA
Seq C2 exon
GGCATACCTGGACCTCCAGGTGCTCCAGGCTTTCCAGGGTCTAAGGGTGACCCTGGGGATGTCCTCACTCTTCCAGGAATGAAAGGTGACAAAGGAGAGTTGGGTTTCCCTGGAGCTCCAGGGCTTCCTGGTCTACCTGGTAGTCCTGGAAAGGATGGTTTGCCAGGACTCCCTGGCCCCAAAGGAGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031274-'22-25,'22-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(53.4=100),PF0139113=Collagen=PU(29.7=59.4)
A:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(35.9=100)
C2:
PF0139113=Collagen=PD(31.2=31.2),PF0139113=Collagen=PU(74.5=64.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTACCAGGTCTCCCAGG
R:
TACCAGGTAGACCAGGAAGCC
Band lengths:
171-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: