GgaEX6033638 @ galGal4
Exon Skipping
Gene
ENSGALG00000008141 | COL4A5
Description
collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:HGNC:2207]
Coordinates
chr4:13893331-13894429:-
Coord C1 exon
chr4:13894337-13894429
Coord A exon
chr4:13893721-13893791
Coord C2 exon
chr4:13893331-13893522
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCCTGTGCTACTCAGGTT
3' ss Score
7.85
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GTGATCAAGGAGACACATGCTTCAATTGTATAGGAACTGGAATATCTGGGCCTCCTGGTGAGAGAGGACCACCGGGACCTCCAGGTAGTCCAG
Seq A exon
GTTCTCCTGGTTTTCCTGGGCCAAAAGGTGAAAAGGGGCTTCCAGGATTAACAGGCCTTGTAGGGCCACCA
Seq C2 exon
GGATTCCCAGGGCCACCAGGTGCTCCTGGGAGACCTGGTCCTAAAGGAGACCCCGGGGATGTCTTGGCTTCACCAAGAATGAAAGGTGACAAAGGAGACCCTGGCTTCCCTGGACCTCCAGGTCTTCCTGGAATAGATGGCACTCCTGGACGAGATGGACTGCCAGGTCTGCCTGGCCCTAAAGGGGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008141-'39-40,'39-38,40-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.1=25.0),PF0139113=Collagen=PU(28.6=56.2)
A:
PF0139113=Collagen=FE(36.5=100)
C2:
PF0139113=Collagen=PD(31.7=31.2),PF0139113=Collagen=PU(63.5=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTGGAATATCTGGGCCT
R:
AAGCCAGGGTCTCCTTTGTCA
Band lengths:
169-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]