RnoEX0023341 @ rn6
Exon Skipping
Gene
ENSRNOG00000018951 | Col4a5
Description
collagen type IV alpha 5 chain [Source:RGD Symbol;Acc:1565499]
Coordinates
chrX:112917050-112919395:+
Coord C1 exon
chrX:112917050-112917142
Coord A exon
chrX:112918439-112918509
Coord C2 exon
chrX:112919204-112919395
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTGATCTATGTATGTCTTAGGAT
3' ss Score
8.5
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
Exon sequences
Seq C1 exon
GTGACAAAGGTGATACTTGCTTCAACTGTATTGGAACTGGCATTTCAGGGCCTCCAGGCCAACCAGGTTTACCAGGTCTCCCAGGTCCTCCAG
Seq A exon
GATCTCTTGGAATCCCTGGAGAGAAGGGCGAGAAAGGACAAGCTGGGACAACTGGTCCAAAAGGATTGCCA
Seq C2 exon
GGCATTCCTGGACCTCCAGGTGCTCCAGGCTTTCCAGGGTCTAAGGGTGACCCTGGTGATGTTCTCACTCTTCCGGGAATGAAAGGTGAAAAAGGAGAATTGGGTTCCCCTGGAGCTCCAGGGCTTCCTGGTCTACCTGGTAGTCCTGGAAAGGATGGTTTGCCAGGACTTCCTGGCCCCAAAGGAGAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018951-'28-28,'28-27,29-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(13.6=28.1),PF0139113=Collagen=FE(50.0=100),PF0139113=Collagen=PU(28.6=56.2)
A:
PF0139113=Collagen=PD(6.5=16.7),PF0139113=Collagen=FE(36.5=100)
C2:
PF0139113=Collagen=PD(31.7=31.2),PF0139113=Collagen=PU(82.0=64.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTTTACCAGGTCTCCCA
R:
TACCAGGTAGACCAGGAAGCC
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]