BtaEX6006019 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014575 | COL4A5
Description
collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:HGNC:2207]
Coordinates
chrX:61702076-61717080:+
Coord C1 exon
chrX:61702076-61702165
Coord A exon
chrX:61709950-61709994
Coord C2 exon
chrX:61717036-61717080
Length
45 bp
Sequences
Splice sites
3' ss Seq
AAATATGTTGTATTTTTCAGGGT
3' ss Score
9.73
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGGGAGAGAGGATTTCCAGGTTTGGAAGGCCACCCAGGTTTGCCTGGATTTCCAGGTCCAGAAGGGCCCCCAGGGCCTCGGGGACAAAAG
Seq A exon
GGTGATGATGGAATTCCAGGGCCACCAGGACCAAAAGGGATCAGA
Seq C2 exon
GGTCCTCCTGGACTTCCTGGATTTCCAGGGACACCAGGTCTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014575-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.967 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGAGAGGATTTCCAGGT
R:
AGGAAGACCTGGTGTCCCTG
Band lengths:
135-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]