HsaEX6052882 @ hg19
Exon Skipping
Gene
ENSG00000188153 | COL4A5
Description
collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:2207]
Coordinates
chrX:107802294-107811903:+
Coord C1 exon
chrX:107802294-107802383
Coord A exon
chrX:107807112-107807156
Coord C2 exon
chrX:107811859-107811903
Length
45 bp
Sequences
Splice sites
3' ss Seq
AAAAATATTGCATTTTTCAGGGT
3' ss Score
6.93
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGAGAGAGAGGGTTTCCAGGTTTGGAAGGACACCCAGGATTGCCTGGATTTCCAGGTCCAGAAGGGCCTCCGGGGCCTCGGGGACAAAAG
Seq A exon
GGTGATGATGGAATTCCAGGGCCACCAGGACCAAAAGGAATCAGA
Seq C2 exon
GGTCCTCCTGGACTTCCTGGATTTCCAGGGACACCAGGTCTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188153-'6-9,'6-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(50.0=100),PF0139113=Collagen=PU(21.2=56.7)
A:
PF0139113=Collagen=FE(16.3=100),PF0139113=Collagen=PU(13.1=73.3)
C2:
PF0139113=Collagen=PD(15.3=73.3),PF0139113=Collagen=FE(17.1=100),PF0139113=Collagen=PU(13.6=60.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGAGAGGGTTTCCAGGT
R:
AGGAAGACCTGGTGTCCCTG
Band lengths:
135-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)