GgaEX1016772 @ galGal4
Exon Skipping
Gene
ENSGALG00000008141 | COL4A5
Description
collagen, type IV, alpha 5 [Source:HGNC Symbol;Acc:HGNC:2207]
Coordinates
chr4:13908577-13910680:-
Coord C1 exon
chr4:13910591-13910680
Coord A exon
chr4:13909328-13909372
Coord C2 exon
chr4:13908577-13908621
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTGGTTTTTTTTAGGGT
3' ss Score
11.08
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGTGAAAGGGGATTCCCAGGCTTGGAAGGACAGCCAGGTCTGCCTGGGTTTCCAGGCCCAGAAGGACCTCCTGGTCCAAGAGGTGCAAAG
Seq A exon
GGTGATGATGGACTTCCAGGACCTATTGGCCCCAAAGGAATCAGA
Seq C2 exon
GGACCACCAGGGCTTCCGGGATTTCCAGGAACTCCAGGACTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008141-'14-8,'14-7,15-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(44.6=100)
A:
PF0139113=Collagen=FE(21.5=100)
C2:
PF0139113=Collagen=FE(21.5=100),PF0139113=Collagen=PU(18.9=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTGGAAGGACAGCCAG
R:
GGAGTTCCTGGAAATCCCGGA
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]