RnoEX6026644 @ rn6
Exon Skipping
Gene
ENSRNOG00000018951 | Col4a5
Description
collagen type IV alpha 5 chain [Source:RGD Symbol;Acc:1565499]
Coordinates
chrX:112882561-112889252:+
Coord C1 exon
chrX:112882561-112882650
Coord A exon
chrX:112887192-112887236
Coord C2 exon
chrX:112889208-112889252
Length
45 bp
Sequences
Splice sites
3' ss Seq
AAATATATTGTGTTTTTTAGGGT
3' ss Score
9.65
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GGAGAACGGGGCTTTCCAGGCTTAGAAGGCCATCCAGGTTTACCAGGATTTCCAGGTCCAGAAGGGCCTCCAGGACCTCGGGGACAAAAG
Seq A exon
GGTGATGATGGAATTCCAGGGCCACCAGGACCAAAAGGAATCAGA
Seq C2 exon
GGTCCTCCTGGACTTCCTGGATTTCCAGGGACACCAGGCCTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018951-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(34.5=100),PF0139113=Collagen=PU(17.0=60.0)
A:
PF0139113=Collagen=FE(16.7=100),PF0139113=Collagen=FE(13.2=100)
C2:
PF0139113=Collagen=PD(13.1=73.3),PF0139113=Collagen=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGGGCTTTCCAGGCTTA
R:
AGGAAGGCCTGGTGTCCC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]