MmuEX0012300 @ mm10
Exon Skipping
Gene
ENSMUSG00000031274 | Col4a5
Description
collagen, type IV, alpha 5 [Source:MGI Symbol;Acc:MGI:88456]
Coordinates
chrX:141545664-141571882:+
Coord C1 exon
chrX:141545664-141545753
Coord A exon
chrX:141558795-141558839
Coord C2 exon
chrX:141571838-141571882
Length
45 bp
Sequences
Splice sites
3' ss Seq
AATAATATTGTGTTTTTCAGGGT
3' ss Score
9.77
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GGAGAACGGGGGTTTCCAGGTTTAGAAGGTCATCCAGGTTTACCAGGATTTCCAGGTCCAGAAGGCCCTCCAGGACCTCGGGGACAAAAG
Seq A exon
GGTGATGATGGAATTCCAGGGCCACCAGGACCAAAAGGAATCAGA
Seq C2 exon
GGTCCTCCTGGACTTCCTGGATTTCCAGGGACACCAGGTCTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031274_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(33.0=100),PF0139113=Collagen=PU(3.1=6.7)
A:
PF0139113=Collagen=FE(15.9=100),PF0139113=Collagen=FE(21.9=100)
C2:
PF0139113=Collagen=FE(15.9=100),PF0139113=Collagen=FE(21.9=100),PF0139113=Collagen=PU(7.9=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGGGGTTTCCAGGTTTA
R:
AGGAAGACCTGGTGTCCCTG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types