BtaEX6006044 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018986 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:62503924-62507156:-
Coord C1 exon
chrX:62507047-62507156
Coord A exon
chrX:62506791-62506929
Coord C2 exon
chrX:62503924-62504074
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCTTCTGTTCAACAGACT
3' ss Score
8.39
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTGTGACTTTATATGCCACCCTTGGCAGAGAAGCTGTAGTTCATGGGTTAAATGAATCTGAGGCTACATATCTGATTACTAGTGTTGAACTTCTGGAGAGTAAACTTAAG
Seq A exon
ACTGCATTGATAGATATCAACTGTGTTAAACATATCATTTATGTGGACAATAAGACTATCAATAAAGCAGAATACCCTGAAGGATTTGAGATTCACAGCATGCAATCAGTAGAAGAGTTGGGATCCAAGCCAGAAAACT
Seq C2 exon
TGAGCGTTTCTCCAAATAGACCAACTCCTTCAGACTTGGCTATTGTCATGTATACCAGTGGATCTACTGGCCGACCTAAGGGAGTGATGATGCATCATAGCAATTTGATAGCTGGAATGACTGGCCAGTGTGAGAGAATTCCTGGGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018986-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.149 C2=0.098
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
PF0050123=AMP-binding=FE(11.0=100)
C2:
PF0050123=AMP-binding=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTTGGCAGAGAAGCTGTA
R:
CCCAGCCCAGGAATTCTCTCA
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]