RnoEX6026659 @ rn6
Exon Skipping
Gene
ENSRNOG00000019180 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:RGD Symbol;Acc:69401]
Coordinates
chrX:113618607-113623954:-
Coord C1 exon
chrX:113623845-113623954
Coord A exon
chrX:113620565-113620703
Coord C2 exon
chrX:113618607-113618757
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTTTGATTTCTGTTCACCAGGCG
3' ss Score
8.17
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTGTGACTTTATATGCTACCCTTGGCAAAGAAGCTGTCGTTCATGGATTAAATGAGTCTGAGGCTTCCTATCTGATTACTAGTGTTGAACTTCTGGAAAGCAAACTGAAG
Seq A exon
GCGGCATTATTAGATATCAATTGTGTTAAACATATCATTTATGTGGATAACAAGACTATCAATAGAGCGGAGTACCCCGAGGGGCTTGAGATTCACAGCATGCAGTCAGTAGAGGAGCTGGGATCCAAGCCAGAAAACT
Seq C2 exon
CAAGCATTCCTCCAAGTAGACCAACTCCTTCGGACATGGCCATTGTCATGTACACCAGTGGCTCTACTGGCCGCCCCAAGGGAGTGATGATGCACCATAGCAATCTGATAGCTGGGATGACAGGCCAGTGTGAGCGCATACCTGGATTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019180-'11-12,'11-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.234 C2=0.255
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
PF0050123=AMP-binding=FE(9.6=100)
C2:
PF0050123=AMP-binding=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCCTTGGCAAAGAAGCT
R:
AATCCAGGTATGCGCTCACAC
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]