GgaEX0011599 @ galGal4
Exon Skipping
Gene
ENSGALG00000008088 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chr4:13745012-13746117:+
Coord C1 exon
chr4:13745012-13745121
Coord A exon
chr4:13745213-13745351
Coord C2 exon
chr4:13745967-13746117
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTCTGTTCTGTAGGCT
3' ss Score
10.23
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TTGTTACCTTGTATGCTACACTGGGTGAAGAGGCAGTAACCTATGGTCTCAATGAATGTGGAGCGTCGTATCTGATCACCAGTGCAGAGCTTCTTGAGAGCAAACTTAAG
Seq A exon
GCTACATTGCCACAGATTTCCTGTCTTAAACATATAATTTATGTGGATAATAAGAATATCAATAAATCTGAATACCCTGAAAATGTTGAGATTCATAGTATGCAGACAGTGGAAGAGCTGGGAGCCAAACCAGAAAATG
Seq C2 exon
CAAGCATTCAGCCAAGCAGACCTGTTCCCACAGACTTGGCTCTAGTAATGTACACCAGCGGCTCTACTGGGAGACCAAAAGGAGTGATGATGCAGCATAAGAACCTTATAGCCGGAATGACAGGACAGTGTGAGAGAATACCTGGGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.170 C2=0.059
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
PF0050123=AMP-binding=FE(9.6=100)
C2:
PF0050123=AMP-binding=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGGGTGAAGAGGCAGTA
R:
CCCAGCCCAGGTATTCTCTCA
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]