MmuEX6046223 @ mm9
Exon Skipping
Gene
ENSMUSG00000031278 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:MGI Symbol;Acc:MGI:1354713]
Coordinates
chrX:138777850-138783654:-
Coord C1 exon
chrX:138783545-138783654
Coord A exon
chrX:138779971-138780109
Coord C2 exon
chrX:138777850-138778000
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTTTTATTTCTGTTCAACAGGCG
3' ss Score
10.05
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTGTGACTTTATATGCCACACTTGGCAGAGAAGCTGTAGTTCATGGATTAAATGAATCTGAGGCTTCCTATCTGATTACTAGTGTTGAGCTTCTGGAAAGCAAACTGAAG
Seq A exon
GCGGCCTTAGTAGATATCAATTGTGTTAAACATATCATTTATGTGGATAATAAGACTATCAATAGAGCAGAGTACCCTGAGGGGCTTGAAATTCACAGCATGCAATCAGTAGAGGAGCTGGGAGCCAAGCCAGAAAACT
Seq C2 exon
TGAGCGTTCCTCCAAGTAGACCAACCCCTTCAGACATGGCCATTGTCATGTACACCAGTGGTTCTACGGGCCGCCCCAAGGGAGTGATGATGCATCATAGCAATTTGATTGCTGGAATGACAGGCCAGTGTGAACGTATCCCTGGACTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031278-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.149 C2=0.235
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
PF0050123=AMP-binding=FE(9.6=100)
C2:
PF0050123=AMP-binding=FE(10.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTTGGCAGAGAAGCTGT
R:
AGTCCAGGGATACGTTCACACT
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: