DreEX0010836 @ danRer10
Exon Skipping
Gene
ENSDARG00000004078 | acsl4a
Description
acyl-CoA synthetase long-chain family member 4a [Source:ZFIN;Acc:ZDB-GENE-040426-1565]
Coordinates
chr14:28138431-28140857:+
Coord C1 exon
chr14:28138431-28138540
Coord A exon
chr14:28140381-28140519
Coord C2 exon
chr14:28140707-28140857
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTATTCCCATGTAGAGT
3' ss Score
7.94
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGGTCACCTTTTATGCGACTCTTGGAGAAGACGCAGTGGCTTATGGATTGAATGAGTCTGGAGTTACACACCTGGTCACCAGTATAGAATTGCTGGAAACAAAACTAAAG
Seq A exon
AGTGTTCTTCTTCAAATTCCCAATTTAAAGCACATCATCTACGTGGACAATAAGAGCATGAACACAGCAGGATTTCCACAGGGCATCCAGATCCACAGCATGCACTCAGTTGAAGAGCTGGGAGCCAAGCCAGAAAACT
Seq C2 exon
TGAATAGACCAATAGTGAAGCCCGTCCCATCAGATCTTGCTGTTATTATGTACACCAGCGGCTCCACCGGGAGACCTAAAGGGGTGATGATCATCCACAGTAACCTGATTGGAGGCATGGCAGGCCAGTGTGAGAGGATACCTGGGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004078-'8-8,'8-6,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
PF0050123=AMP-binding=FE(9.7=100)
C2:
PF0050123=AMP-binding=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTCTTGGAGAAGACGCAG
R:
CCCAACCCAGGTATCCTCTCA
Band lengths:
246-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]