BtaEX6006467 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84692509-84693715:+
Coord C1 exon
chrX:84692509-84692575
Coord A exon
chrX:84693009-84693303
Coord C2 exon
chrX:84693538-84693715
Length
295 bp
Sequences
Splice sites
3' ss Seq
CCGCCCCCCCCCCCACCCAGTTC
3' ss Score
7.24
5' ss Seq
GAAGTACGT
5' ss Score
7.46
Exon sequences
Seq C1 exon
AAGAGAAGCGAGCGCGTTAGAAGAGTAGAGCCTCCAAAACCTGAGGTTGTGGATTCCACTGAAAGCA
Seq A exon
TTCCAGTGTCAGATGAGGATTCTGATGCCATGGTAGATGATCCCAATGATGAGGACTTCGTGCCATTCCGGCCCCGGCGCTCTCCTCGCATGTCTCTACGCTCGAGTGTGGCACAGAGGGCCGGGCGCTCTTCAGTAGGCACCAAGATGACATGCGCCCACTGCCGGACACCGCTGCAGAAGGGCCAGACGGCCTACCAGCGCAAGGGGCTGCCTCAGCTCTTCTGCTCTTCATCCTGCCTCACCACTTTCTCCAAGAAGCCCTCTGGCAAAAAGACCTGCACCTTCTGCAAGAA
Seq C2 exon
GGAGATCTGGAACACCAAGGACTCCGTTGTGGCGCAGACCGGTTCGGGAGGTTCCTTCCATGAGTTCTGCACATCCGTCTGTCTCTCCCTGTATGAGGCCCAGCAGCAGCGCCCAATCCCCCAGTCTGGGGATCTTGCTGATGCCACTCGCTGCAGCATATGCCAGAAGACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492-'11-9,'11-6,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.475 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=41.4),PF064679=zf-FCS=PU(28.9=13.1)
C2:
PF064679=zf-FCS=PD(68.9=51.7),PF064679=zf-FCS=PU(36.8=23.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGCGCGTTAGAAGAGTAG
R:
ATATGCTGCAGCGAGTGGC
Band lengths:
221-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]