Special

HsaEX6052266 @ hg19

Exon Skipping

Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70469876-70471100:-
Coord C1 exon
chrX:70471028-70471100
Coord A exon
chrX:70470282-70470576
Coord C2 exon
chrX:70469876-70470053
Length
295 bp
Sequences
Splice sites
3' ss Seq
CCATCCCCCCACTTTCTCAGTTC
3' ss Score
6.45
5' ss Seq
GAAGTGCGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
GTACAGAAGAGAAGCGAGCGCGTTAGGAGAGCAGAACCTCCAAAACCTGAGGTTGTAGATTCCACTGAGAGCA
Seq A exon
TTCCAGTGTCAGATGAGGATTCTGATGCCATGGTAGATGACCCCAATGATGAGGACTTTGTGCCATTCCGGCCCCGGCGCTCTCCTCGCATGTCCCTACGCTCAAGTGTGTCACAAAGGGCCGGGCGCTCTGCAGTGGGCACCAAGATGACTTGTGCACATTGCCGGACACCACTGCAGAAGGGGCAGACTGCCTATCAGCGCAAGGGGCTGCCTCAGCTCTTCTGCTCGTCATCCTGCCTCACCACTTTCTCCAAGAAGCCCTCGGGCAAAAAGACCTGTACCTTCTGCAAGAA
Seq C2 exon
GGAGATCTGGAACACCAAGGACTCGGTTGTGGCGCAGACTGGTTCTGGAGGCTCCTTCCATGAGTTCTGCACATCCGTCTGTCTCTCCCTGTATGAGGCCCAGCAGCAGCGCCCGATCCCCCAGTCTGGGGATCCCGCCGACGCTACTCGCTGCAGCATATGCCAGAAGACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=0.475 C2=0.188
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
PF064679=zf-FCS=WD(100=40.4),PF064679=zf-FCS=PU(28.9=13.1)

							
C2:
PF064679=zf-FCS=PD(68.9=51.7),PF064679=zf-FCS=PU(38.5=25.0)

						

					

				








    
Main Inclusion Isoform:
ENSP00000363100





     
                   









    
Main Skipping Isoform:
ENSP00000363090





     
      









    
Other Inclusion Isoforms:
ENSP00000322845, ENSP00000343909, ENSP00000363093, ENSP00000363094, ENSP00000363096, ENSP00000363110
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


hg38




Conservation


Mouse
(mm10)
chrX:101416167-101416461 
ALTERNATIVE
MmuEX0053931
(Zmym3)
Mouse
(mm9)
chrX:98611506-98611800 
ALTERNATIVE
MmuEX0053931
(Zmym3)
Rat
(rn6)
chrX:71310772-71311066 
ALTERNATIVE
RnoEX0102040
(Zmym3)
Cow
(bosTau6)
chrX:84693009-84693303 
HIGH PSI
BtaEX6006467
(ZMYM3)
Chicken
(galGal4)
chr4:2273902-2274193 
HIGH PSI
GgaEX6033113
(ZMYM3)
Chicken
(galGal3)
chr4:2282902-2283193 
HIGH PSI
GgaEX6033113
(ZMYM3)
Zebrafish
(danRer10)
chr9:21638864-21639149 
HIGH PSI
DreEX6035991
(zmym2)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTACAGAAGAGAAGCGAGCGC

				
R: 
GAGTAGCGTCGGCGGGATC

				
Band lengths: 
222-517

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Autistic and control brains






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"