MmuEX0053931 @ mm10
Exon Skipping
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101415761-101416981:-
Coord C1 exon
chrX:101416909-101416981
Coord A exon
chrX:101416167-101416461
Coord C2 exon
chrX:101415761-101415938
Length
295 bp
Sequences
Splice sites
3' ss Seq
TGCCCCGCCTACTCCCACAGTTC
3' ss Score
8.28
5' ss Seq
GAAGTGCGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
GTACAGAAGAGAAGCGAGCGCGTTAGAAGAGCAGAACCTCCAAAGCCTGAGGTTGTGGACTCCACTGAGAGCA
Seq A exon
TTCCAGTGTCAGATGAGGATTCTGATGCCATGGTAGATGACCCCAATGATGAGGACTTTGTGCCATTCCGGCCCCGGCGCTCTCCTCGCATGTCCCTGCGCTCAAGTATGGCACAAAGGGCTGGGCGCTCTTCAATGGGCACCAAGATGTCTTGTGCACATTGCCGGACACCACTGCAGAAGGGGCAGACGGCCTATCAGCGCAAGGGGTTGCCTCAGCTCTTCTGTTCTTCATCTTGTCTCACTACTTACTCCAAGAAGCCCTTGGGCAGAAAGACCTGTACCTTCTGCAAGAA
Seq C2 exon
GGAGATCTGGAACACCAAGGACTCAGTTGTGGTACAGACTGGTCCAGGAGGCTCCTTCCATGAGTTCTGCACATCTGTCTGTCTCTCTCTCTATGAGGCCCAGCAGCAGCGTCCAATCCCCCAGTCTGGGGATCCTGCCGATGCCACTCGCTGCAGCATATGCCAGAAGACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=0.510 C2=0.155
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=41.4),PF064679=zf-FCS=PU(28.9=13.1)
C2:
PF064679=zf-FCS=PD(68.9=51.7),PF064679=zf-FCS=PU(38.5=25.0)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGAAGAGAAGCGAGCGC
R:
ATATGCTGCAGCGAGTGGC
Band lengths:
234-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types